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A Biophysical-Model-Informed Source Separation Framework For EMG Decomposition

Halatsis, D., Mamidanna, P., Pereira, J., Farina, D.

arXiv.org Artificial Intelligence

Recent advances in neural interfacing have enabled significant improvements in human-computer interaction, rehabilitation, and neuromuscular diagnostics. Motor unit (MU) decomposition from surface electromyography (sEMG) is a key technique for extracting neural drive information, but traditional blind source separation (BSS) methods fail to incorporate biophysical constraints, limiting their accuracy and interpretability. In this work, we introduce a novel Biophysical-Model-Informed Source Separation (BMISS) framework, which integrates anatomically accurate forward EMG models into the decomposition process. By leveraging MRI-based anatomical reconstructions and generative modeling, our approach enables direct inversion of a biophysically accurate forward model to estimate both neural drive and motor neuron properties in an unsupervised manner. Empirical validation in a controlled simulated setting demonstrates that BMISS achieves higher fidelity motor unit estimation while significantly reducing computational cost compared to traditional methods. This framework paves the way for non-invasive, personalized neuromuscular assessments, with potential applications in clinical diagnostics, prosthetic control, and neurorehabilitation.



emg2qwerty: A Large Dataset with Baselines for Touch Typing using Surface Electromyography

Sivakumar, Viswanath, Seely, Jeffrey, Du, Alan, Bittner, Sean R, Berenzweig, Adam, Bolarinwa, Anuoluwapo, Gramfort, Alexandre, Mandel, Michael I

arXiv.org Artificial Intelligence

Surface electromyography (sEMG) non-invasively measures signals generated by muscle activity with sufficient sensitivity to detect individual spinal neurons and richness to identify dozens of gestures and their nuances. Wearable wrist-based sEMG sensors have the potential to offer low friction, subtle, information rich, always available human-computer inputs. To this end, we introduce emg2qwerty, a large-scale dataset of non-invasive electromyographic signals recorded at the wrists while touch typing on a QWERTY keyboard, together with ground-truth annotations and reproducible baselines. With 1,135 sessions spanning 108 users and 346 hours of recording, this is the largest such public dataset to date. These data demonstrate non-trivial, but well defined hierarchical relationships both in terms of the generative process, from neurons to muscles and muscle combinations, as well as in terms of domain shift across users and user sessions. Applying standard modeling techniques from the closely related field of Automatic Speech Recognition (ASR), we show strong baseline performance on predicting key-presses using sEMG signals alone. We believe the richness of this task and dataset will facilitate progress in several problems of interest to both the machine learning and neuroscientific communities. Dataset and code can be accessed at https://github.com/facebookresearch/emg2qwerty.


Intramuscular High-Density Micro-Electrode Arrays Enable High-Precision Decoding and Mapping of Spinal Motor Neurons to Reveal Hand Control

Grison, Agnese, Pereda, Jaime Ibanez, Muceli, Silvia, Kundu, Aritra, Baracat, Farah, Indiveri, Giacomo, Donati, Elisa, Farina, Dario

arXiv.org Artificial Intelligence

Decoding nervous system activity is a key challenge in neuroscience and neural interfacing. In this study, we propose a novel neural decoding system that enables unprecedented large-scale sampling of muscle activity. Using micro-electrode arrays with more than 100 channels embedded within the forearm muscles, we recorded high-density signals that captured multi-unit motor neuron activity. This extensive sampling was complemented by advanced methods for neural decomposition, analysis, and classification, allowing us to accurately detect and interpret the spiking activity of spinal motor neurons that innervate hand muscles. We evaluated this system in two healthy participants, each implanted with three electromyogram (EMG) micro-electrode arrays (comprising 40 electrodes each) in the forearm. These arrays recorded muscle activity during both single- and multi-digit isometric contractions. For the first time under controlled conditions, we demonstrate that multi-digit tasks elicit unique patterns of motor neuron recruitment specific to each task, rather than employing combinations of recruitment patterns from single-digit tasks. This observation led us to hypothesize that hand tasks could be classified with high precision based on the decoded neural activity. We achieved perfect classification accuracy (100%) across 12 distinct single- and multi-digit tasks, and consistently high accuracy (>96\%) across all conditions and subjects, for up to 16 task classes. These results significantly outperformed conventional EMG classification methods. The exceptional performance of this system paves the way for developing advanced neural interfaces based on invasive high-density EMG technology. This innovation could greatly enhance human-computer interaction and lead to substantial improvements in assistive technologies, offering new possibilities for restoring motor function in clinical applications.


Separation of Neural Drives to Muscles from Transferred Polyfunctional Nerves using Implanted Micro-electrode Arrays

Ferrante, Laura, Boesendorfer, Anna, Barsakcioglu, Deren Yusuf, Baumgartner, Benedikt, Al-Ajam, Yazan, Woollard, Alex, Kang, Norbert Venantius, Aszmann, Oskar, Farina, Dario

arXiv.org Artificial Intelligence

Following limb amputation, neural signals for limb functions persist in the residual peripheral nerves. Targeted muscle reinnervation (TMR) allows to redirected these signals into spare muscles to recover the neural information through electromyography (EMG). However, a significant challenge arises in separating distinct neural commands redirected from the transferred nerves to the muscles. Disentangling overlapping signals from EMG recordings remains complex, as they can contain mixed neural information that complicates limb function interpretation. To address this challenge, Regenerative Peripheral Nerve Interfaces (RPNIs) surgically partition the nerve into individual fascicles that reinnervate specific muscle grafts, isolating distinct neural sources for more precise control and interpretation of EMG signals. We introduce a novel biointerface that combines TMR surgery of polyvalent nerves with a high-density micro-electrode array implanted at a single site within a reinnervated muscle. Instead of surgically identifying distinct nerve fascicles, our approach separates all neural signals that are re-directed into a single muscle, using the high spatio-temporal selectivity of the micro-electrode array and mathematical source separation methods. We recorded EMG signals from four reinnervated muscles while volunteers performed phantom limb tasks. The decomposition of these signals into motor unit activity revealed distinct clusters of motor neurons associated with diverse functional tasks. Notably, our method enabled the extraction of multiple neural commands within a single reinnervated muscle, eliminating the need for surgical nerve division. This approach not only has the potential of enhancing prosthesis control but also uncovers mechanisms of motor neuron synergies following TMR, providing valuable insights into how the central nervous system encodes movement after reinnervation.


Generative Multiple-Instance Learning Models For Quantitative Electromyography

Adel, Tameem, Smith, Benn, Urner, Ruth, Stashuk, Daniel, Lizotte, Daniel J.

arXiv.org Machine Learning

We present a comprehensive study of the use of generative modeling approaches for Multiple-Instance Learning (MIL) problems. In MIL a learner receives training instances grouped together into bags with labels for the bags only (which might not be correct for the comprised instances). Our work was motivated by the task of facilitating the diagnosis of neuromuscular disorders using sets of motor unit potential trains (MUPTs) detected within a muscle which can be cast as a MIL problem. Our approach leads to a state-of-the-art solution to the problem of muscle classification. By introducing and analyzing generative models for MIL in a general framework and examining a variety of model structures and components, our work also serves as a methodological guide to modelling MIL tasks. We evaluate our proposed methods both on MUPT datasets and on the MUSK1 dataset, one of the most widely used benchmarks for MIL.